PH01000476G0050's details annotation
1.Annotation
ICBR annotation: HEAT repeat family protein, putative, expressed
Blast result AT3G25800 : 0.00E+00
Blast annotation: protein phosphatase 2A subunit A2
2.Location
Scaffold: PH01000476
Strand: +
| Region | Start | End |
| gene | 73938 | 79362 |
| mRNA | 73938 | 79362 |
| exon | 73938 | 74652 |
| exon | 75037 | 75283 |
| exon | 76544 | 76656 |
| exon | 76857 | 76936 |
| exon | 77088 | 77226 |
| exon | 77317 | 77397 |
| exon | 77696 | 77776 |
| exon | 78755 | 78804 |
| exon | 78869 | 79362 |
| CDS | 74260 | 74652 |
| CDS | 75037 | 75283 |
| CDS | 76544 | 76656 |
| CDS | 76857 | 76936 |
| CDS | 77088 | 77226 |
| CDS | 77317 | 77397 |
| CDS | 77696 | 77776 |
| CDS | 78755 | 78804 |
| CDS | 78869 | 79130 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001759 | Citrate_cycle_(TCA_cycle) tricarboxylic acid cycle enzyme complex, phenylalanyl-tRNA aminoacylation, fumarate metabolic process, tricarboxylic acid cycle, tRNA aminoacylation, phenylalanine-tRNA ligase activity, fumarate hydratase activity, tRNA binding, Carbon_fixation_pathways_in_prokaryotes Aminoacyl-tRNA_biosynthesis Pyruvate_metabolism Glycolysis_/_Gluconeogenesis |
| coexpression network | CFinderM001760 | Citrate_cycle_(TCA_cycle) oxoglutarate dehydrogenase complex, transferase activity, transferring acyl groups, protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, dihydrolipoyllysine-residue succinyltransferase activity, tricarboxylic acid cycle, electron transport chain, cellular protein modification process, Lysine_degradation |
| coexpression network | CFinderM001847 | peptide-methionine_(R)-S-oxide_reductase_activity binding, metallopeptidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12755.6 | Vac14_Fab1_bd | 229 | 300 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005488 | binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.