PH01000496G0060's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000496
Strand: +
| Region | Start | End |
| gene | 47248 | 49156 |
| mRNA | 47248 | 49156 |
| exon | 47248 | 49156 |
| CDS | 47743 | 48843 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000916 | bZIP Transcription_Regulator(from PlantTFDB) Protein_export MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001351 | GH100 Glycoside_Hydrolases Protein_export glycopeptide_alpha-N-acetylgalactosaminidase_activity serine-type peptidase activity, |
| coexpression network | CFinderM001391 | Lysine_biosynthesis L,L-diaminopimelate_aminotransferase_activity C3H Transcription_Regulator(from PlantTFDB) lysine biosynthetic process via diaminopimelate, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.