Annotation of co-expression genes

PH01000507G0150's details annotation

1.Annotation

ICBR annotation: citrate transporter, putative, expressed

Blast result AT5G64290 : 5.80E-74
Blast annotation: dicarboxylate transport 2.1

2.Location

Scaffold: PH01000507
Strand: -

RegionStartEnd
gene9626097940
mRNA9626097940
exon9626096322
exon9644496511
exon9711297940
CDS9627196322
CDS9644496511
CDS9711297864

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000509Whirly Transcription_Regulator(from PlantTFDB)
protochlorophyllide reductase activity,
Photosynthesis
Porphyrin_and_chlorophyll_metabolism
photosystem II,
oxygen evolving complex,
RNA_degradation
coexpression networkCFinderM000510Porphyrin_and_chlorophyll_metabolism
protochlorophyllide reductase activity,
glutamate-1-semialdehyde 2,1-aminomutase activity,
tetrapyrrole biosynthetic process,
sodium ion transport,
RNA_degradation

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00939.18Na_sulph_symp75251

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005215transporter activity
GO:0006814sodium ion transport
GO:0016020membrane
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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