PH01000519G0850's details annotation
1.Annotation
ICBR annotation: MAG2, putative, expressed
Blast result AT3G47700 : 0.00E+00
Blast annotation: RINT-1 / TIP-1 family
2.Location
Scaffold: PH01000519
Strand: -
| Region | Start | End |
| gene | 559819 | 565118 |
| mRNA | 559819 | 565118 |
| exon | 559819 | 561900 |
| exon | 561982 | 562093 |
| exon | 562950 | 562971 |
| exon | 564444 | 564548 |
| exon | 564637 | 565118 |
| CDS | 560029 | 561900 |
| CDS | 561982 | 562093 |
| CDS | 562950 | 562971 |
| CDS | 564444 | 564548 |
| CDS | 564637 | 564928 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000681 | protein arginylation, GH47 Glycoside_Hydrolases arginyltransferase activity, mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis |
| coexpression network | CFinderM001493 | ARID Transcription_Regulator(from iTAK) magnesium_ion_transport magnesium_ion_transmembrane_transporter_activity |
| coexpression network | CFinderM001762 | isocitrate metabolic process, formaldehyde_catabolic_process isocitrate dehydrogenase (NADP+) activity, S-formylglutathione hydrolase activity, galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, carboxylesterase activity, Carbon_fixation_pathways_in_prokaryotes Peroxisome Glutathione_metabolism Citrate_cycle_(TCA_cycle) NAD binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04437.12 | RINT1_TIP1 | 310 | 796 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.