PH01000569G0160's details annotation
1.Annotation
ICBR annotation: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
Blast result AT5G16000 : 0.00E+00
Blast annotation: NSP-interacting kinase 1
2.Location
Scaffold: PH01000569
Strand: -
| Region | Start | End |
| gene | 106387 | 111597 |
| mRNA | 106387 | 111597 |
| exon | 106387 | 106948 |
| exon | 107043 | 107422 |
| exon | 107706 | 108047 |
| exon | 108140 | 108289 |
| exon | 108835 | 108989 |
| exon | 109039 | 109182 |
| exon | 109305 | 109376 |
| exon | 109480 | 109612 |
| exon | 109785 | 111597 |
| CDS | 106628 | 106948 |
| CDS | 107043 | 107422 |
| CDS | 107706 | 108047 |
| CDS | 108140 | 108289 |
| CDS | 108835 | 108989 |
| CDS | 109039 | 109182 |
| CDS | 109305 | 109376 |
| CDS | 109480 | 109612 |
| CDS | 109785 | 109890 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000787 | TKL-Pl-3 (from iTAK) RLK-Pelle_LRR-II (from iTAK) RNA-directed RNA polymerase activity, protein phosphorylation, |
| coexpression network | CFinderM000995 | nucleus, riboflavin kinase activity, RLK-Pelle_LRR-II (from iTAK) B3-ARF Transcription_Regulator(from iTAK) ARF Transcription_Regulator(from PlantTFDB) Riboflavin_metabolism DNA_replication Mismatch_repair Nucleotide_excision_repair riboflavin biosynthetic process, response to hormone stimulus, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08263.11 | LRRNT_2 | 33 | 72 |
| PF07714.16 | Pkinase_Tyr | 283 | 549 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.