PH01000581G0690's details annotation
1.Annotation
ICBR annotation: ESP4, putative, expressed
Blast result AT1G27595 : 1.00E-164
Blast annotation: -
2.Location
Scaffold: PH01000581
Strand: -
| Region | Start | End |
| gene | 480467 | 500065 |
| mRNA | 480467 | 500065 |
| exon | 480467 | 480746 |
| exon | 481382 | 481406 |
| exon | 481861 | 481944 |
| exon | 482365 | 482409 |
| exon | 482597 | 482668 |
| exon | 483192 | 483230 |
| exon | 484028 | 484123 |
| exon | 485322 | 485396 |
| exon | 486910 | 486957 |
| exon | 487074 | 487157 |
| exon | 487251 | 487361 |
| exon | 487604 | 487771 |
| exon | 489556 | 489696 |
| exon | 489785 | 489832 |
| exon | 490210 | 490452 |
| exon | 490558 | 490638 |
| exon | 491879 | 491947 |
| exon | 492136 | 492723 |
| exon | 492798 | 493379 |
| exon | 493509 | 493628 |
| exon | 494542 | 494734 |
| exon | 495333 | 495495 |
| exon | 495588 | 495690 |
| exon | 496072 | 496164 |
| exon | 497809 | 497968 |
| exon | 498931 | 500065 |
| CDS | 480565 | 480746 |
| CDS | 481382 | 481406 |
| CDS | 481861 | 481944 |
| CDS | 482365 | 482409 |
| CDS | 482597 | 482668 |
| CDS | 483192 | 483230 |
| CDS | 484028 | 484123 |
| CDS | 485322 | 485396 |
| CDS | 486910 | 486957 |
| CDS | 487074 | 487157 |
| CDS | 487251 | 487361 |
| CDS | 487604 | 487771 |
| CDS | 489556 | 489696 |
| CDS | 489785 | 489832 |
| CDS | 490210 | 490452 |
| CDS | 490558 | 490638 |
| CDS | 491879 | 491947 |
| CDS | 492136 | 492723 |
| CDS | 492798 | 493379 |
| CDS | 493509 | 493628 |
| CDS | 494542 | 494734 |
| CDS | 495333 | 495495 |
| CDS | 495588 | 495690 |
| CDS | 496072 | 496164 |
| CDS | 497809 | 497968 |
| CDS | 498931 | 499049 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001034 | STE_STE20-YSK (from iTAK) protein phosphatase type 2A complex, glycolipid_6-alpha-mannosyltransferase_activity GDP-Man:Man1GlcNAc2-PP-Dol_alpha-1,3-mannosyltransferase_activity C3H Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001608 | pyruvate dehydrogenase complex, dihydrolipoyllysine-residue acetyltransferase activity, pyruvate metabolic process, protein processing, small-subunit processome, integral to membrane, transferase activity, transferring acyl groups, mRNA_surveillance_pathway Pyruvate_metabolism Glycolysis_/_Gluconeogenesis Citrate_cycle_(TCA_cycle) |
| coexpression network | CFinderM001616 | intra-Golgi vesicle-mediated transport, Golgi organization, Golgi_transport_complex mRNA_surveillance_pathway |
| coexpression network | CFinderM001617 | Golgi organization, mRNA_surveillance_pathway solute:hydrogen antiporter activity, integral to membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF11935.7 | DUF3453 | 68 | 287 |
| PF12295.7 | Symplekin_C | 1023 | 1176 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| mRNA surveillance pathway | symplekin | ko03015 | K06100 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.