PH01000659G0750's details annotation
1.Annotation
ICBR annotation: VHS and GAT domain containing protein, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01000659
Strand: -
| Region | Start | End |
| gene | 554510 | 556417 |
| mRNA | 554510 | 556417 |
| exon | 554510 | 555553 |
| exon | 555635 | 555761 |
| exon | 556231 | 556417 |
| CDS | 554677 | 555553 |
| CDS | 555635 | 555761 |
| CDS | 556231 | 556312 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001843 | Valine,_leucine_and_isoleucine_degradation Valine,_leucine_and_isoleucine_biosynthesis PLATZ Transcription_Regulator(from iTAK) protein complex, microtubule, TRAF Transcription_Regulator(from iTAK) branched chain family amino acid metabolic process, branched-chain-amino-acid transaminase activity, protein polymerization, translational initiation, microtubule-based process, Pantothenate_and_CoA_biosynthesis structural constituent of cytoskeleton, |
| coexpression network | CFinderM001844 | PLATZ Transcription_Regulator(from iTAK) TRAF Transcription_Regulator(from iTAK) microtubule, protein complex, Plant_hormone_signal_transduction Phagosome protein polymerization, microtubule-based process, |
| coexpression network | CFinderM001845 | protein complex, microtubule, PLATZ Transcription_Regulator(from iTAK) Phagosome mRNA_surveillance_pathway CAMK_CAMKL-CHK1 (from iTAK) protein polymerization, microtubule-based process, dephosphorylation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.