PH01000682G0550's details annotation
1.Annotation
ICBR annotation: heat shock factor-binding protein 1, putative, expressed
Blast result AT4G15802 : 1.70E-12
Blast annotation: heat shock factor binding protein
2.Location
Scaffold: PH01000682
Strand: -
| Region | Start | End |
| gene | 390108 | 393807 |
| mRNA | 390108 | 393807 |
| exon | 390108 | 390897 |
| exon | 391577 | 391658 |
| exon | 392569 | 392592 |
| exon | 392767 | 392820 |
| exon | 393350 | 393807 |
| CDS | 390818 | 390897 |
| CDS | 391577 | 391658 |
| CDS | 392569 | 392592 |
| CDS | 392767 | 392820 |
| CDS | 393350 | 393385 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000746 | CMGC_DYRK-YAK (from iTAK) TKL-Pl-6 (from iTAK) |
| coexpression network | CFinderM001808 | protein binding, Peroxisome RNA_degradation Endocytosis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.