PH01000705G0460's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G17900 : 8.50E-80
Blast annotation: -
2.Location
Scaffold: PH01000705
Strand: -
| Region | Start | End |
| gene | 308395 | 313834 |
| mRNA | 308395 | 313834 |
| exon | 308395 | 309007 |
| exon | 309272 | 309375 |
| exon | 309468 | 309769 |
| exon | 309855 | 309988 |
| exon | 310075 | 310280 |
| exon | 310874 | 311028 |
| exon | 311255 | 311400 |
| exon | 311584 | 311704 |
| exon | 312803 | 313372 |
| exon | 313434 | 313834 |
| CDS | 308937 | 309007 |
| CDS | 309272 | 309375 |
| CDS | 309468 | 309769 |
| CDS | 309855 | 309988 |
| CDS | 310075 | 310280 |
| CDS | 310874 | 311028 |
| CDS | 311255 | 311400 |
| CDS | 311584 | 311704 |
| CDS | 312803 | 313372 |
| CDS | 313434 | 313505 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000681 | protein arginylation, GH47 Glycoside_Hydrolases arginyltransferase activity, mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, Various_types_of_N-glycan_biosynthesis N-Glycan_biosynthesis |
| coexpression network | CFinderM001605 | isocitrate metabolic process, isocitrate dehydrogenase (NADP+) activity, Carbon_fixation_pathways_in_prokaryotes Citrate_cycle_(TCA_cycle) Glutathione_metabolism Peroxisome NAD binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, magnesium ion binding, galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, membrane coat, COPI vesicle coat, structural molecule activity, |
| coexpression network | CFinderM001762 | isocitrate metabolic process, formaldehyde_catabolic_process isocitrate dehydrogenase (NADP+) activity, S-formylglutathione hydrolase activity, galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, carboxylesterase activity, Carbon_fixation_pathways_in_prokaryotes Peroxisome Glutathione_metabolism Citrate_cycle_(TCA_cycle) NAD binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.