PH01000836G0690's details annotation
1.Annotation
ICBR annotation: pyridoxamine 5'-phosphate oxidase family protein, putative, expressed
Blast result AT1G51560 : 1.00E-125
Blast annotation: Pyridoxamine 5-phosphate oxidase family protein
2.Location
Scaffold: PH01000836
Strand: -
| Region | Start | End |
| gene | 462656 | 468441 |
| mRNA | 462656 | 468441 |
| exon | 462656 | 463500 |
| exon | 464039 | 464164 |
| exon | 464323 | 464434 |
| exon | 465297 | 465388 |
| exon | 466272 | 466349 |
| exon | 466419 | 466498 |
| exon | 466591 | 466693 |
| exon | 466841 | 467026 |
| exon | 467750 | 468441 |
| CDS | 463369 | 463500 |
| CDS | 464039 | 464164 |
| CDS | 464323 | 464434 |
| CDS | 465297 | 465388 |
| CDS | 466272 | 466349 |
| CDS | 466419 | 466498 |
| CDS | 466591 | 466693 |
| CDS | 466841 | 467026 |
| CDS | 467750 | 468025 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000916 | bZIP Transcription_Regulator(from PlantTFDB) Protein_export MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM000924 | Ribosome_biogenesis_in_eukaryotes Protein_export omega_peptidase_activity ribosome biogenesis, |
| coexpression network | CFinderM001391 | Lysine_biosynthesis L,L-diaminopimelate_aminotransferase_activity C3H Transcription_Regulator(from PlantTFDB) lysine biosynthetic process via diaminopimelate, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13883.5 | Pyrid_oxidase_2 | 148 | 292 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0010181 | FMN binding |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.