PH01000853G0290's details annotation
1.Annotation
ICBR annotation: mps one binder kinase activator-like 1A, putative, expressed
Blast result AT5G45550 : 6.00E-119
Blast annotation: Mob1/phocein family protein
2.Location
Scaffold: PH01000853
Strand: +
| Region | Start | End |
| gene | 179185 | 183848 |
| mRNA | 179185 | 183848 |
| exon | 179185 | 179633 |
| exon | 180093 | 180141 |
| exon | 181350 | 181458 |
| exon | 181641 | 181734 |
| exon | 183187 | 183320 |
| exon | 183418 | 183581 |
| exon | 183657 | 183848 |
| CDS | 179611 | 179633 |
| CDS | 180093 | 180141 |
| CDS | 181350 | 181458 |
| CDS | 181641 | 181734 |
| CDS | 183187 | 183320 |
| CDS | 183418 | 183581 |
| CDS | 183657 | 183731 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000323 | Diterpenoid_biosynthesis Lysine_degradation SET Transcription_Regulator(from iTAK) histone_methylation electron carrier activity, heme binding, oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, iron ion binding, histone_lysine_methylation histone_binding histone-lysine N-methyltransferase activity, oxidation-reduction process, |
| coexpression network | CFinderM001362 | Protein_processing_in_endoplasmic_reticulum mannose biosynthetic process, Lysine_degradation SET Transcription_Regulator(from iTAK) histone_methylation phosphomannomutase activity, histone_lysine_methylation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03637.16 | Mob1_phocein | 34 | 204 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.