PH01000918G0400's details annotation
1.Annotation
ICBR annotation: actin, putative, expressed
Blast result AT3G12110 : 0.00E+00
Blast annotation: actin-11
2.Location
Scaffold: PH01000918
Strand: -
| Region | Start | End |
| gene | 240129 | 244108 |
| mRNA | 240129 | 244108 |
| exon | 240129 | 240621 |
| exon | 240747 | 241360 |
| exon | 241660 | 242053 |
| exon | 242135 | 244108 |
| CDS | 240556 | 240621 |
| CDS | 240747 | 241360 |
| CDS | 241660 | 242053 |
| CDS | 242135 | 242194 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000505 | Phagosome regulation of actin filament polymerization, cytoskeleton, GRAS Transcription_Regulator(from PlantTFDB) Rho GDP-dissociation inhibitor activity, |
| coexpression network | CFinderM000534 | CMGC_GSK (from iTAK) transcription factor TFIID complex, intracellular, Basal_transcription_factors Phagosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00022.18 | Actin | 5 | 377 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Phagosome | actin beta/gamma 1 | ko04145 | K05692 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005524 | ATP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.