PH01000992G0340's details annotation
1.Annotation
ICBR annotation: SAC9, putative, expressed
Blast result AT3G59770 : 6.10E-98
Blast annotation: sacI homology domain-containing protein / WW domain-containing protein
2.Location
Scaffold: PH01000992
Strand: -
| Region | Start | End |
| gene | 249607 | 254316 |
| mRNA | 249607 | 254316 |
| exon | 249607 | 249953 |
| exon | 250062 | 250259 |
| exon | 250533 | 251306 |
| exon | 251788 | 252261 |
| exon | 252358 | 252600 |
| exon | 253444 | 253738 |
| exon | 253929 | 254316 |
| CDS | 249945 | 249953 |
| CDS | 250062 | 250259 |
| CDS | 250533 | 251306 |
| CDS | 251788 | 252261 |
| CDS | 252358 | 252600 |
| CDS | 253444 | 253738 |
| CDS | 253929 | 254131 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001512 | leucyl-tRNA aminoacylation, GT8 GlycosylTransferases leucine-tRNA ligase activity, aminoacyl-tRNA_editing_activity tRNA aminoacylation for protein translation, Starch_and_sucrose_metabolism Amino_sugar_and_nucleotide_sugar_metabolism Aminoacyl-tRNA_biosynthesis |
| coexpression network | CFinderM001829 | retrograde transport, endosome to Golgi, proton transport, hydrogen-translocating pyrophosphatase activity, inorganic diphosphatase activity, Ether_lipid_metabolism WRKY Transcription_Regulator(from PlantTFDB) Glycerophospholipid_metabolism Oxidative_phosphorylation |
| coexpression network | CFinderM001893 | Golgi-associated vesicle, Terpenoid_backbone_biosynthesis membrane coat, COPI vesicle coat, isoprenoid biosynthetic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.