PH01001075G0520's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01001075
Strand: -
| Region | Start | End |
| gene | 356353 | 373733 |
| mRNA | 356353 | 373733 |
| exon | 356353 | 356744 |
| exon | 357082 | 357150 |
| exon | 357381 | 357443 |
| exon | 357526 | 357606 |
| exon | 358241 | 358303 |
| exon | 358386 | 358466 |
| exon | 358560 | 358715 |
| exon | 358799 | 358873 |
| exon | 359447 | 359557 |
| exon | 359759 | 359857 |
| exon | 360404 | 360493 |
| exon | 360786 | 360858 |
| exon | 361295 | 361367 |
| exon | 361553 | 361640 |
| exon | 361745 | 361819 |
| exon | 363753 | 363826 |
| exon | 364181 | 364233 |
| exon | 364412 | 364531 |
| exon | 364725 | 364756 |
| exon | 365443 | 365487 |
| exon | 365773 | 365829 |
| exon | 369292 | 369396 |
| exon | 370806 | 370910 |
| exon | 371181 | 371259 |
| exon | 372616 | 373733 |
| CDS | 356634 | 356744 |
| CDS | 357082 | 357150 |
| CDS | 357381 | 357443 |
| CDS | 357526 | 357606 |
| CDS | 358241 | 358303 |
| CDS | 358386 | 358466 |
| CDS | 358560 | 358715 |
| CDS | 358799 | 358873 |
| CDS | 359447 | 359557 |
| CDS | 359759 | 359857 |
| CDS | 360404 | 360493 |
| CDS | 360786 | 360858 |
| CDS | 361295 | 361367 |
| CDS | 361553 | 361640 |
| CDS | 361745 | 361819 |
| CDS | 363753 | 363826 |
| CDS | 364181 | 364233 |
| CDS | 364412 | 364531 |
| CDS | 364725 | 364756 |
| CDS | 365443 | 365487 |
| CDS | 365773 | 365829 |
| CDS | 369292 | 369396 |
| CDS | 370806 | 370910 |
| CDS | 371181 | 371259 |
| CDS | 372616 | 372668 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000733 | TBP-class_protein_binding positive_regulation_of_transcription,_DNA-templated WASH_complex outer membrane, transcription initiation, DNA-dependent, zinc ion binding, |
| coexpression network | CFinderM000734 | WASH_complex cytoskeleton, phagocytosis, malate metabolic process, cellular carbohydrate metabolic process, malate dehydrogenase activity, L-malate dehydrogenase activity, |
| coexpression network | CFinderM000898 | WASH_complex cullin-RING ubiquitin ligase complex, PHD Transcription_Regulator(from iTAK) mitotic_spindle_assembly_checkpoint ubiquitin protein ligase binding, cysteine-type peptidase activity, protein serine/threonine phosphatase activity, |
| coexpression network | CFinderM001242 | mitotic_spindle_assembly_checkpoint WASH_complex PHD Transcription_Regulator(from iTAK) N-Glycan_biosynthesis Various_types_of_N-glycan_biosynthesis |
| coexpression network | CFinderM001424 | WASH_complex N-Glycan_biosynthesis Various_types_of_N-glycan_biosynthesis Peroxisome |
| coexpression network | CFinderM001581 | WASH_complex DNA_ligation_involved_in_DNA_repair drug_binding DNA_ligase_activity DNA ligase (ATP) activity, DNA recombination, DNA repair, |
| coexpression network | CFinderM001830 | WASH_complex drug_binding oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, Butanoate_metabolism Pyruvate_metabolism Citrate_cycle_(TCA_cycle) Glycolysis_/_Gluconeogenesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF10266.8 | Strumpellin | 98 | 574 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0071203 | WASH complex |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.