PH01001083G0160's details annotation
1.Annotation
ICBR annotation: acyl-CoA synthetase protein, putative, expressed
Blast result AT1G77590 : 3.00E-177
Blast annotation: long chain acyl-CoA synthetase 9
2.Location
Scaffold: PH01001083
Strand: +
| Region | Start | End |
| gene | 104661 | 109276 |
| mRNA | 104661 | 109276 |
| exon | 104661 | 105713 |
| exon | 106184 | 106315 |
| exon | 106406 | 106579 |
| exon | 106669 | 106803 |
| exon | 107064 | 107201 |
| exon | 107622 | 107753 |
| exon | 107827 | 107961 |
| exon | 108030 | 108236 |
| exon | 108825 | 109276 |
| CDS | 105366 | 105713 |
| CDS | 106184 | 106315 |
| CDS | 106406 | 106579 |
| CDS | 106669 | 106803 |
| CDS | 107064 | 107201 |
| CDS | 107622 | 107753 |
| CDS | 107827 | 107961 |
| CDS | 108030 | 108236 |
| CDS | 108825 | 108989 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001471 | regulation of translational initiation, eukaryotic translation initiation factor 3 complex, WRKY Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001756 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis Lipoic_acid_metabolism HB-BELL Transcription_Regulator(from iTAK) TALE Transcription_Regulator(from PlantTFDB) aromatic amino acid family biosynthetic process, lipoate biosynthetic process, lipoate synthase activity, 3-dehydroquinate synthase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00501.27 | AMP-binding | 117 | 389 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0008152 | metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.