Gene details

Annotation of co-expression genes

PH01001116G0330's details annotation

1.Annotation

ICBR annotation: PPR repeat domain containing protein, putative, expressed

Blast result AT5G67570 : 1.70E-88
Blast annotation: Tetratricopeptide repeat (TPR)-like superfamily protein

2.Location

Scaffold: PH01001116
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000837	glutamyl-tRNA aminoacylation, guanosine tetraphosphate metabolic process, tRNA aminoacylation, Aminoacyl-tRNA_biosynthesis Porphyrin_and_chlorophyll_metabolism glutamate-tRNA ligase activity, ligase activity, forming aminoacyl-tRNA and related compounds, tRNA binding, tRNA aminoacylation for protein translation,
coexpression network	CFinderM001247	CAMTA Transcription_Regulator(from PlantTFDB) superoxide metabolic process, Peroxisome Protein_export superoxide dismutase activity,
coexpression network	CFinderM001447	superoxide metabolic process, superoxide dismutase activity, Peroxisome
coexpression network	CFinderM001513	Glycine,_serine_and_threonine_metabolism GH17 Glycoside_Hydrolases L-serine biosynthetic process, phosphoglycerate dehydrogenase activity, Methane_metabolism cofactor binding,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
null	null	null	null

10.Gene Ontology

GO Accession	GO Annotation
null	null

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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