PH01001246G0640's details annotation
1.Annotation
ICBR annotation: BSD domain-containing protein, putative, expressed
Blast result AT1G69030 : 1.70E-29
Blast annotation: BSD domain-containing protein
2.Location
Scaffold: PH01001246
Strand: +
| Region | Start | End |
| gene | 395700 | 396585 |
| mRNA | 395700 | 396585 |
| exon | 395700 | 396411 |
| exon | 396485 | 396585 |
| CDS | 396021 | 396411 |
| CDS | 396485 | 396585 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000830 | cytoskeleton, proton-transporting ATP synthase complex, catalytic core F(1), phagocytosis, branched chain family amino acid biosynthetic process, signal peptide processing, phosphoacetylglucosamine mutase activity, Other_glycan_degradation |
| coexpression network | CFinderM000872 | SWI/SNF-BAF60b Transcription_Regulator(from iTAK) ER to Golgi vesicle-mediated transport, regulation_of_cell_cycle regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity protein_kinase_binding |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.