PH01001269G0070's details annotation
1.Annotation
ICBR annotation: mov34/MPN/PAD-1 family protein, expressed
Blast result AT4G16144 : 2.00E-119
Blast annotation: associated molecule with the SH3 domain of STAM 3
2.Location
Scaffold: PH01001269
Strand: +
| Region | Start | End |
| gene | 47020 | 58243 |
| mRNA | 47020 | 58243 |
| exon | 47020 | 47817 |
| exon | 49037 | 49379 |
| exon | 49624 | 49692 |
| exon | 50074 | 50241 |
| exon | 50371 | 50477 |
| exon | 51479 | 51584 |
| exon | 51681 | 51727 |
| exon | 52801 | 53125 |
| exon | 53287 | 53376 |
| exon | 53452 | 53514 |
| exon | 53655 | 53729 |
| exon | 54523 | 54585 |
| exon | 54913 | 54959 |
| exon | 56212 | 56218 |
| exon | 56770 | 56822 |
| exon | 57523 | 58243 |
| CDS | 47687 | 47817 |
| CDS | 49037 | 49379 |
| CDS | 49624 | 49692 |
| CDS | 50074 | 50241 |
| CDS | 50371 | 50477 |
| CDS | 51479 | 51584 |
| CDS | 51681 | 51727 |
| CDS | 52801 | 53125 |
| CDS | 53287 | 53376 |
| CDS | 53452 | 53514 |
| CDS | 53655 | 53729 |
| CDS | 54523 | 54585 |
| CDS | 54913 | 54959 |
| CDS | 56212 | 56218 |
| CDS | 56770 | 56822 |
| CDS | 57523 | 57703 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000341 | exosome_(RNase_complex) COP9_signalosome |
| coexpression network | CFinderM001105 | Endocytosis pseudouridine synthesis, RNA modification, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity protein_kinase_binding pseudouridine synthase activity, |
| coexpression network | CFinderM001106 | Endocytosis |
| coexpression network | CFinderM001149 | ketol-acid reductoisomerase activity, branched chain family amino acid biosynthetic process, cellular amino acid biosynthetic process, SCY1_SCYL2 (from iTAK) coenzyme binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, Endocytosis |
| coexpression network | CFinderM001808 | protein binding, Peroxisome RNA_degradation Endocytosis |
| coexpression network | CFinderM001832 | histone deacetylation, Endocytosis histone deacetylase activity, cellular protein metabolic process, regulation_of_cyclin-dependent_protein_serine/threonine_kinase_activity NAD+ ADP-ribosyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01398.20 | JAB | 428 | 530 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Endocytosis | STAM-binding protein [EC:3.1.2.15] | ko04144 | K11866 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.