PH01001490G0340's details annotation
1.Annotation
ICBR annotation: OsAPx4 - Peroxisomal Ascorbate Peroxidase encoding gene 5,8,9, expressed
Blast result AT4G35000 : 3.00E-115
Blast annotation: ascorbate peroxidase 3
2.Location
Scaffold: PH01001490
Strand: +
| Region | Start | End |
| gene | 261184 | 269015 |
| mRNA | 261184 | 269015 |
| exon | 261184 | 261517 |
| exon | 263198 | 263322 |
| exon | 263976 | 264025 |
| exon | 264684 | 264749 |
| exon | 264829 | 264877 |
| exon | 265548 | 265630 |
| exon | 265711 | 265790 |
| exon | 265885 | 265987 |
| exon | 266109 | 266311 |
| exon | 268468 | 268609 |
| exon | 268644 | 269015 |
| CDS | 261405 | 261517 |
| CDS | 263198 | 263322 |
| CDS | 263976 | 264025 |
| CDS | 264684 | 264749 |
| CDS | 264829 | 264877 |
| CDS | 265548 | 265630 |
| CDS | 265711 | 265790 |
| CDS | 265885 | 265987 |
| CDS | 266109 | 266311 |
| CDS | 268468 | 268609 |
| CDS | 268644 | 268922 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001045 | membrane, 1,3-beta-D-glucan synthase complex, Glutathione_metabolism MYB_related Transcription_Regulator(from PlantTFDB) Ascorbate_and_aldarate_metabolism MYB-related Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001288 | HB-KNOX Transcription_Regulator(from iTAK) TALE Transcription_Regulator(from PlantTFDB) MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) Amino_sugar_and_nucleotide_sugar_metabolism Glutathione_metabolism SNARE_interactions_in_vesicular_transport Ascorbate_and_aldarate_metabolism |
| coexpression network | CFinderM001562 | HB-KNOX Transcription_Regulator(from iTAK) sterol_24-C-methyltransferase_activity TALE Transcription_Regulator(from PlantTFDB) SNARE_interactions_in_vesicular_transport Steroid_biosynthesis MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) Ascorbate_and_aldarate_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | MYB-related |
| Transcription_Regulator(from PlantTFDB) | MYB_related |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00141.22 | peroxidase | 18 | 224 |
| PF00249.30 | Myb_DNA-binding | 290 | 314 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glutathione metabolism | L-ascorbate peroxidase [EC:1.11.1.11] | ko00480 | K00434 |
| Ascorbate and aldarate metabolism | L-ascorbate peroxidase [EC:1.11.1.11] | ko00053 | K00434 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003682 | chromatin binding |
| GO:0004601 | peroxidase activity |
| GO:0006979 | response to oxidative stress |
| GO:0020037 | heme binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.