PH01001513G0040's details annotation
1.Annotation
ICBR annotation: 2-oxo acid dehydrogenases acyltransferase domain containing protein, expressed
Blast result AT1G54220 : 1.00E-105
Blast annotation: Dihydrolipoamide acetyltransferase, long form protein
2.Location
Scaffold: PH01001513
Strand: +
| Region | Start | End |
| gene | 16602 | 20752 |
| mRNA | 16602 | 20752 |
| exon | 16602 | 17270 |
| exon | 18291 | 18363 |
| exon | 18557 | 18628 |
| exon | 18715 | 18800 |
| exon | 18932 | 19007 |
| exon | 19176 | 19243 |
| exon | 19326 | 19392 |
| exon | 19466 | 19561 |
| exon | 19637 | 19739 |
| exon | 20189 | 20284 |
| exon | 20375 | 20752 |
| CDS | 17014 | 17270 |
| CDS | 18291 | 18363 |
| CDS | 18557 | 18628 |
| CDS | 18715 | 18800 |
| CDS | 18932 | 19007 |
| CDS | 19176 | 19243 |
| CDS | 19326 | 19392 |
| CDS | 19466 | 19561 |
| CDS | 19637 | 19739 |
| CDS | 20189 | 20284 |
| CDS | 20375 | 20445 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001422 | Glycine,_serine_and_threonine_metabolism small-subunit processome, mitochondrial proton-transporting ATP synthase complex, coupling factor F(o), clathrin adaptor complex, |
| coexpression network | CFinderM001634 | Citrate_cycle_(TCA_cycle) Pyruvate_metabolism Glycolysis_/_Gluconeogenesis transferase activity, transferring acyl groups, pyruvate dehydrogenase complex, dihydrolipoyllysine-residue acetyltransferase activity, metabolic process, pyruvate metabolic process, small-subunit processome, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00198.22 | 2-oxoacid_dh | 126 | 354 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glycolysis / Gluconeogenesis | pyruvate dehydrogenase E2 component (dihydrolipoamideacetyltransferase)[EC:2.3.1.12] | ko00010 | K00627 |
| Citrate cycle (TCA cycle) | pyruvate dehydrogenase E2 component (dihydrolipoamideacetyltransferase)[EC:2.3.1.12] | ko00020 | K00627 |
| Pyruvate metabolism | pyruvate dehydrogenase E2 component (dihydrolipoamideacetyltransferase)[EC:2.3.1.12] | ko00620 | K00627 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016746 | transferase activity, transferring acyl groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.