CFinderM001422's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Glycine,_serine_and_threonine_metabolism0.005708601KEGG
small-subunit processome,0.008241366GO:0032040
mitochondrial proton-transporting ATP synthase complex, coupling factor F(o),0.008241366GO:0000276
clathrin adaptor complex,0.010974076GO:0030131

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000031G0320mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferaseAT4G26850 (6.00E-108)
PH01000041G1530aldehyde dehydrogenase 10A9AT3G48170 (2.00E-176)
PH01000158G1400Clathrin adaptor complexes medium subunit family proteinAT4G24550 (1.00E-147)
PH01000713G0320Carbohydrate-binding-like foldAT3G62360 (0.00E+00)
PH01001137G0250ATP synthase D chain, mitochondrialAT3G52300 (1.80E-74)
PH01001513G0040Dihydrolipoamide acetyltransferase, long form proteinAT1G54220 (1.00E-105)
PH01001726G0180AAA-type ATPase family proteinAT4G04910 (1.00E-163)
PH01003530G0070Protein phosphatase 2C family proteinAT5G53140 (6.20E-84)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000305small-subunit processome,
regulation of ARF GTPase activity,
GT2 GlycosylTransferases
Starch_and_sucrose_metabolism
Endocytosis
details
CFinderM000789Glycine,_serine_and_threonine_metabolism
Proteasome
details
CFinderM001294small-subunit processome,
DNA integration,
ubiquitin-dependent protein catabolic process,
details
CFinderM001312metalloendopeptidase activity,
Riboflavin_metabolism
6-phosphofructokinase complex,
GTP cyclohydrolase II activity,
catalytic activity,
3,4-dihydroxy-2-butanone-4-phosphate synthase activity,
proteolysis,
riboflavin biosynthetic process,
metallopeptidase activity,
6-phosphofructokinase activity,
glycolysis,
details
CFinderM001421protein catabolic process,
Proteasome
Glycine,_serine_and_threonine_metabolism
protein phosphatase type 2A complex,
cytoplasm,
protein phosphatase type 2A regulator activity,
Rab GDP-dissociation inhibitor activity,
nucleoside-triphosphatase activity,
hydrolase activity,
details
CFinderM001608pyruvate dehydrogenase complex,
dihydrolipoyllysine-residue acetyltransferase activity,
pyruvate metabolic process,
protein processing,
small-subunit processome,
integral to membrane,
transferase activity, transferring acyl groups,
mRNA_surveillance_pathway
Pyruvate_metabolism
Glycolysis_/_Gluconeogenesis
Citrate_cycle_(TCA_cycle)
details
CFinderM001634Citrate_cycle_(TCA_cycle)
Pyruvate_metabolism
Glycolysis_/_Gluconeogenesis
transferase activity, transferring acyl groups,
pyruvate dehydrogenase complex,
dihydrolipoyllysine-residue acetyltransferase activity,
metabolic process,
pyruvate metabolic process,
small-subunit processome,
details
CFinderM001686Oxidative_phosphorylation
GTnc GlycosylTransferases
mitochondrial proton-transporting ATP synthase complex, coupling factor F(o),
small-subunit processome,
proton-transporting V-type ATPase, V1 domain,
proton-transporting two-sector ATPase complex, catalytic domain,
ATP synthesis coupled proton transport,
ATP metabolic process,
proton transport,
ATP hydrolysis coupled proton transport,
Phagosome
details
CFinderM001736Oxidative_phosphorylation
proton-transporting V-type ATPase, V1 domain,
mitochondrial proton-transporting ATP synthase complex, coupling factor F(o),
proton-transporting two-sector ATPase complex, catalytic domain,
clathrin adaptor complex,
Phagosome
ATP metabolic process,
proton transport,
ATP synthesis coupled proton transport,
ATP hydrolysis coupled proton transport,
hydrogen ion transmembrane transporter activity,
transferase activity, transferring alkyl or aryl (other than methyl) groups,
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances,
details

4.Expression profilings

Created with Highcharts 4.1.6Gene expression profiling among different tissue samples0123456leaf_SRR2035212leaf_SRR2035327leaf_SRR4450543_CKleaf_SRR4450545_Dehydrationleaf_SRR4450547_Dehydrationleaf_SRR4450549_Coldleaf_SRR4450551_ColdLeaf-2Leaf_ERR105068Root_1Root_3Root_5Root_ERR105075RhizomeRhizome_ERR105074culm_SRR1187864shoot_SAM_Ashoot_MIN_Cshoot_YNO_Ashoot_YNO_Cshoot_MNO_Ashoot_MNO_Cshoot_SAM_Cshoot_YIN_Ashoot_YIN_Cshoot_MIN_Ashoot_SRR3050072shoot_SRR3056056shoot_SRR3521411Shoot_A2Shoot_B1Shoot_B3Shoot_C2Shoot_D1Shoot_D3Bud_1Bud_3panicle_early_ERR105069panicle_flowering_ERR105071PH01000031G0320PH01000041G1530PH01000158G1400PH01000713G0320PH01001137G0250PH01001513G0040PH01001726G0180PH01003530G0070Highcharts.com
PH01000713G0320