Annotation of co-expression genes

PH01001726G0180's details annotation

1.Annotation

ICBR annotation: nop14-like family protein, expressed

Blast result AT4G04910 : 1.00E-163
Blast annotation: AAA-type ATPase family protein

2.Location

Scaffold: PH01001726
Strand: -

RegionStartEnd
gene178802192583
mRNA178802192583
exon178802180338
exon180528180650
exon180841180928
exon181059181156
exon181467181527
exon181612181743
exon183246183456
exon183792183925
exon184295184377
exon184464184524
exon185632185892
exon186028186306
exon186394186536
exon186609186713
exon186915187108
exon187199187391
exon187530188183
exon188388188516
exon189007189198
exon189922189987
exon190485190540
exon190632190731
exon191347191464
exon191949192583
CDS180045180338
CDS180528180650
CDS180841180928
CDS181059181156
CDS181467181527
CDS181612181743
CDS183246183456
CDS183792183925
CDS184295184377
CDS184464184524
CDS185632185892
CDS186028186306
CDS186394186536
CDS186609186713
CDS186915187108
CDS187199187391
CDS187530188183
CDS188388188516
CDS189007189198
CDS189922189987
CDS190485190540
CDS190632190731
CDS191347191464
CDS191949192100

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000305small-subunit processome,
regulation of ARF GTPase activity,
GT2 GlycosylTransferases
Starch_and_sucrose_metabolism
Endocytosis
coexpression networkCFinderM001294small-subunit processome,
DNA integration,
ubiquitin-dependent protein catabolic process,
coexpression networkCFinderM001422Glycine,_serine_and_threonine_metabolism
small-subunit processome,
mitochondrial proton-transporting ATP synthase complex, coupling factor F(o),
clathrin adaptor complex,
coexpression networkCFinderM001608pyruvate dehydrogenase complex,
dihydrolipoyllysine-residue acetyltransferase activity,
pyruvate metabolic process,
protein processing,
small-subunit processome,
integral to membrane,
transferase activity, transferring acyl groups,
mRNA_surveillance_pathway
Pyruvate_metabolism
Glycolysis_/_Gluconeogenesis
Citrate_cycle_(TCA_cycle)
coexpression networkCFinderM001634Citrate_cycle_(TCA_cycle)
Pyruvate_metabolism
Glycolysis_/_Gluconeogenesis
transferase activity, transferring acyl groups,
pyruvate dehydrogenase complex,
dihydrolipoyllysine-residue acetyltransferase activity,
metabolic process,
pyruvate metabolic process,
small-subunit processome,
coexpression networkCFinderM001686Oxidative_phosphorylation
GTnc GlycosylTransferases
mitochondrial proton-transporting ATP synthase complex, coupling factor F(o),
small-subunit processome,
proton-transporting V-type ATPase, V1 domain,
proton-transporting two-sector ATPase complex, catalytic domain,
ATP synthesis coupled proton transport,
ATP metabolic process,
proton transport,
ATP hydrolysis coupled proton transport,
Phagosome

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00004.28AAA92171
PF04147.11Nop14163866
PF00004.28AAA880940
PF00004.28AAA10811184

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005524ATP binding
GO:0032040small-subunit processome

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.