Annotation of co-expression genes

PH01001658G0300's details annotation

1.Annotation

ICBR annotation: AMP deaminase, putative, expressed

Blast result AT2G38280 : 0.00E+00
Blast annotation: AMP deaminase, putative / myoadenylate deaminase, putative

2.Location

Scaffold: PH01001658
Strand: -

RegionStartEnd
gene239725249100
mRNA239725249100
exon239725241063
exon241347241427
exon241814241924
exon241993242046
exon242186242338
exon242789242929
exon243125243328
exon243406243467
exon243651243793
exon243877243944
exon244061244240
exon244608244735
exon244837244888
exon244984245118
exon245779245829
exon246537246718
exon247345249100
CDS240995241063
CDS241347241427
CDS241814241924
CDS241993242046
CDS242186242338
CDS242789242929
CDS243125243328
CDS243406243467
CDS243651243793
CDS243877243944
CDS244061244240
CDS244608244735
CDS244837244888
CDS244984245118
CDS245779245829
CDS246537246718
CDS247345247633

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000316RLK-Pelle_RLCK-IV (from iTAK)
AGC_NDR (from iTAK)
Jumonji Transcription_Regulator(from iTAK)
signal transducer activity,
coexpression networkCFinderM001478GH47 Glycoside_Hydrolases
purine ribonucleoside monophosphate biosynthetic process,
IMP biosynthetic process,
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity,
deaminase activity,
AMP deaminase activity,
potassium_ion_transmembrane_transport
membrane,
potassium ion transmembrane transporter activity,
coexpression networkCFinderM001620GT37 GlycosylTransferases
cell wall biogenesis,
purine ribonucleoside monophosphate biosynthetic process,
IMP biosynthetic process,
AMP deaminase activity,
deaminase activity,
galactoside 2-alpha-L-fucosyltransferase activity,
N-acetyltransferase_activity
coexpression networkCFinderM001621AGC_NDR (from iTAK)
purine ribonucleoside monophosphate biosynthetic process,
IMP biosynthetic process,
ubiquitin ligase complex,
G-protein coupled receptor signaling pathway,
AMP deaminase activity,
guanyl nucleotide binding,
G-protein_beta/gamma-subunit_complex_binding
deaminase activity,
Spliceosome

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00962.21A_deaminase306651

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003876AMP deaminase activity
GO:0006188IMP biosynthetic process
GO:0009168purine ribonucleoside monophosphate biosynthetic process
GO:0019239deaminase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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