PH01001852G0460's details annotation
1.Annotation
ICBR annotation: hydrolase, alpha/beta fold family protein, putative, expressed
Blast result AT5G21950 : 1.10E-50
Blast annotation: alpha/beta-Hydrolases superfamily protein
2.Location
Scaffold: PH01001852
Strand: +
| Region | Start | End |
| gene | 273879 | 278019 |
| mRNA | 273879 | 278019 |
| exon | 273879 | 275259 |
| exon | 277425 | 277517 |
| exon | 277600 | 277667 |
| exon | 277760 | 278019 |
| CDS | 274930 | 275259 |
| CDS | 277425 | 277517 |
| CDS | 277600 | 277667 |
| CDS | 277760 | 277913 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001133 | tRNA_(cytosine-5-)-methyltransferase_activity RNA modification, C3H Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001855 | Base_excision_repair GPI anchor metabolic process, DNA recombination, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12697.6 | Abhydrolase_6 | 58 | 305 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.