PH01002010G0120's details annotation
1.Annotation
ICBR annotation: 1,3-beta-glucan synthase component domain containing protein, expressed
Blast result AT2G31960 : 1.70E-92
Blast annotation: glucan synthase-like 3
2.Location
Scaffold: PH01002010
Strand: +
| Region | Start | End |
| gene | 75428 | 79323 |
| mRNA | 75428 | 79323 |
| exon | 75428 | 75680 |
| exon | 76407 | 76488 |
| exon | 76562 | 76611 |
| exon | 76693 | 76779 |
| exon | 77323 | 77426 |
| exon | 77511 | 77595 |
| exon | 77688 | 77848 |
| exon | 77939 | 78062 |
| exon | 78136 | 78233 |
| exon | 78772 | 79323 |
| CDS | 75669 | 75680 |
| CDS | 76407 | 76488 |
| CDS | 76562 | 76611 |
| CDS | 76693 | 76779 |
| CDS | 77323 | 77426 |
| CDS | 77511 | 77595 |
| CDS | 77688 | 77848 |
| CDS | 77939 | 78062 |
| CDS | 78136 | 78233 |
| CDS | 78772 | 79303 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000569 | CMGC_Pl-Tthe (from iTAK) 1,3-beta-D-glucan synthase activity, 1,3-beta-D-glucan synthase complex, membrane, Regulation_of_autophagy |
| coexpression network | CFinderM001123 | 1,3-beta-D-glucan synthase activity, (1->3)-beta-D-glucan biosynthetic process, 1,3-beta-D-glucan synthase complex, RNA-dependent DNA replication, membrane, RNA-directed DNA polymerase activity, |
| coexpression network | CFinderM001124 | AGC_NDR (from iTAK) Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003843 | 1,3-beta-D-glucan synthase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.