CFinderM001123's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
1,3-beta-D-glucan synthase activity,0.000171197GO:0003843
(1->3)-beta-D-glucan biosynthetic process,0.014039223GO:0006075
1,3-beta-D-glucan synthase complex,0.014039223GO:0000148
RNA-dependent DNA replication,0.014570022GO:0006278
membrane,0.03241904GO:0016020
RNA-directed DNA polymerase activity,0.040472285GO:0003964

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000010G0320early-responsive to dehydration stress protein (ERD4)AT4G35870 (0.00E+00)
PH01000106G0310histone-lysine N-methyltransferasesAT3G26850 (6.20E-23)
PH01000639G0510-AT4G01290 (1.00E-81)
PH01001580G0270-- (-)
PH01002010G0120glucan synthase-like 3AT2G31960 (1.70E-92)
PH01002010G0130glucan synthase-like 12AT5G13000 (0)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000316RLK-Pelle_RLCK-IV (from iTAK)
AGC_NDR (from iTAK)
Jumonji Transcription_Regulator(from iTAK)
signal transducer activity,
details
CFinderM000569CMGC_Pl-Tthe (from iTAK)
1,3-beta-D-glucan synthase activity,
1,3-beta-D-glucan synthase complex,
membrane,
Regulation_of_autophagy
details
CFinderM000584membrane,
TKL-Pl-6 (from iTAK)
TKL-Pl-4 (from iTAK)
1,3-beta-D-glucan synthase complex,
(1->3)-beta-D-glucan biosynthetic process,
RNA-dependent DNA replication,
details
CFinderM001124AGC_NDR (from iTAK)
Spliceosome
details
CFinderM001345C3H Transcription_Regulator(from PlantTFDB)
1,3-beta-D-glucan synthase complex,
catalase activity,
membrane,
(1->3)-beta-D-glucan biosynthetic process,
Tryptophan_metabolism
Glyoxylate_and_dicarboxylate_metabolism
Peroxisome
RNA-dependent DNA replication,
Methane_metabolism
details

4.Expression profilings

Created with Highcharts 4.1.6Gene expression profiling among different tissue samples0246leaf_SRR2035212leaf_SRR2035327leaf_SRR4450543_CKleaf_SRR4450545_Dehydrationleaf_SRR4450547_Dehydrationleaf_SRR4450549_Coldleaf_SRR4450551_ColdLeaf-2Leaf_ERR105068Root_1Root_3Root_5Root_ERR105075RhizomeRhizome_ERR105074culm_SRR1187864shoot_SAM_Ashoot_MIN_Cshoot_YNO_Ashoot_YNO_Cshoot_MNO_Ashoot_MNO_Cshoot_SAM_Cshoot_YIN_Ashoot_YIN_Cshoot_MIN_Ashoot_SRR3050072shoot_SRR3056056shoot_SRR3521411Shoot_A2Shoot_B1Shoot_B3Shoot_C2Shoot_D1Shoot_D3Bud_1Bud_3panicle_early_ERR105069panicle_flowering_ERR105071PH01000010G0320PH01000106G0310PH01000639G0510PH01001580G0270PH01002010G0120PH01002010G0130Highcharts.com