PH01002051G0230's details annotation
1.Annotation
ICBR annotation: histone-lysine N-methyltransferase ASHH2, putative, expressed
Blast result AT1G77300 : 1.00E-125
Blast annotation: histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific)
2.Location
Scaffold: PH01002051
Strand: +
| Region | Start | End |
| gene | 133416 | 150689 |
| mRNA | 133416 | 150689 |
| exon | 133416 | 139380 |
| exon | 139466 | 139670 |
| exon | 140741 | 140880 |
| exon | 141013 | 141092 |
| exon | 142056 | 142172 |
| exon | 142727 | 142819 |
| exon | 143407 | 143463 |
| exon | 143641 | 144304 |
| exon | 144388 | 144443 |
| exon | 145524 | 145600 |
| exon | 145678 | 145760 |
| exon | 145853 | 145932 |
| exon | 146148 | 146227 |
| exon | 146799 | 146844 |
| exon | 147697 | 148166 |
| exon | 148219 | 148279 |
| exon | 148403 | 148593 |
| exon | 149269 | 149346 |
| exon | 149851 | 150052 |
| exon | 150182 | 150689 |
| CDS | 135645 | 139380 |
| CDS | 139466 | 139670 |
| CDS | 140741 | 140880 |
| CDS | 141013 | 141092 |
| CDS | 142056 | 142172 |
| CDS | 142727 | 142819 |
| CDS | 143407 | 143463 |
| CDS | 143641 | 144304 |
| CDS | 144388 | 144443 |
| CDS | 145524 | 145600 |
| CDS | 145678 | 145760 |
| CDS | 145853 | 145932 |
| CDS | 146148 | 146227 |
| CDS | 146799 | 146844 |
| CDS | 147697 | 148166 |
| CDS | 148219 | 148279 |
| CDS | 148403 | 148593 |
| CDS | 149269 | 149346 |
| CDS | 149851 | 150052 |
| CDS | 150182 | 150274 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000431 | Porphyrin_and_chlorophyll_metabolism C2C2-Dof Transcription_Regulator(from iTAK) HB-BELL Transcription_Regulator(from iTAK) TRAF Transcription_Regulator(from iTAK) Dof Transcription_Regulator(from PlantTFDB) TALE Transcription_Regulator(from PlantTFDB) oxygen-dependent protoporphyrinogen oxidase activity, |
| coexpression network | CFinderM001239 | DNA repair, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07496.14 | zf-CW | 1287 | 1332 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.