PH01002073G0270's details annotation
1.Annotation
ICBR annotation: helicase SEN1, putative, expressed
Blast result AT4G30100 : 0.00E+00
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01002073
Strand: -
| Region | Start | End |
| gene | 233582 | 243327 |
| mRNA | 233582 | 243327 |
| exon | 233582 | 234489 |
| exon | 234603 | 236378 |
| exon | 236459 | 236585 |
| exon | 237445 | 237613 |
| exon | 237763 | 237819 |
| exon | 238038 | 238226 |
| exon | 238737 | 243327 |
| CDS | 234103 | 234489 |
| CDS | 234603 | 236378 |
| CDS | 236459 | 236585 |
| CDS | 237445 | 237613 |
| CDS | 237763 | 237819 |
| CDS | 238038 | 238226 |
| CDS | 238737 | 240117 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001134 | Lysine_biosynthesis regulation of translational initiation, eukaryotic translation initiation factor 3 complex, spliceosomal complex, Ribosome |
| coexpression network | CFinderM001428 | nuclear mRNA splicing, via spliceosome, spliceosomal complex, cell volume homeostasis, COPII_vesicle_coating lysine biosynthetic process via diaminopimelate, chloride transport, dihydrodipicolinate synthase activity, snRNA_binding Lysine_biosynthesis |
| coexpression network | CFinderM001569 | Alanine,_aspartate_and_glutamate_metabolism TAZ Transcription_Regulator(from iTAK) Group-Pl-3 (from iTAK) CMGC_CLK (from iTAK) NF-YC Transcription_Regulator(from PlantTFDB) HB-other Transcription_Regulator(from PlantTFDB) arginine biosynthetic process, 'de novo' IMP biosynthetic process, eukaryotic translation elongation factor 1 complex, argininosuccinate synthase activity, phosphoribosylformylglycinamidine cyclo-ligase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13086.5 | AAA_11 | 685 | 1035 |
| PF13087.5 | AAA_12 | 1042 | 1238 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.