Annotation of co-expression genes

PH01002106G0290's details annotation

1.Annotation

ICBR annotation: syntaxin 6, putative, expressed

Blast result AT1G28490 : 1.00E-54
Blast annotation: syntaxin of plants 61

2.Location

Scaffold: PH01002106
Strand: +

RegionStartEnd
gene214349217152
mRNA214349217152
exon214349214417
exon214923215036
exon215293215406
exon215730215887
exon216536216626
exon216882216947
exon216995217152
CDS214394214417
CDS214923215036
CDS215293215406
CDS215730215887
CDS216536216626
CDS216882216947
CDS216995217039

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000909Homologous_recombination
DNA_replication
Mismatch_repair
histone-lysine N-methyltransferase activity,
single-stranded DNA binding,
Golgi vesicle transport,
coexpression networkCFinderM001805Golgi vesicle transport,
vesicle-mediated transport,
Spliceosome

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF09177.10Syntaxin-6_N788

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0016020membrane
GO:0016192vesicle-mediated transport
GO:0048193Golgi vesicle transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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