PH01002164G0040's details annotation
1.Annotation
ICBR annotation: zinc finger, C3HC4 type domain containing protein, expressed
Blast result - : -
Blast annotation: -
2.Location
Scaffold: PH01002164
Strand: +
| Region | Start | End |
| gene | 27164 | 32813 |
| mRNA | 27164 | 32813 |
| exon | 27164 | 28437 |
| exon | 28690 | 29039 |
| exon | 30384 | 30533 |
| exon | 30575 | 30739 |
| exon | 31491 | 31574 |
| exon | 32037 | 32813 |
| CDS | 27612 | 28437 |
| CDS | 28690 | 29039 |
| CDS | 30384 | 30533 |
| CDS | 30575 | 30739 |
| CDS | 31491 | 31574 |
| CDS | 32037 | 32135 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000826 | dihydrodipicolinate synthase activity, Lysine_biosynthesis lysine biosynthetic process via diaminopimelate, spliceosomal complex, nuclear mRNA splicing, via spliceosome, lyase activity, GT48 GlycosylTransferases C3H Transcription_Regulator(from PlantTFDB) rRNA binding, |
| coexpression network | CFinderM001134 | Lysine_biosynthesis regulation of translational initiation, eukaryotic translation initiation factor 3 complex, spliceosomal complex, Ribosome |
| coexpression network | CFinderM001209 | Lysine_biosynthesis dihydrodipicolinate synthase activity, lysine biosynthetic process via diaminopimelate, |
| coexpression network | CFinderM001428 | nuclear mRNA splicing, via spliceosome, spliceosomal complex, cell volume homeostasis, COPII_vesicle_coating lysine biosynthetic process via diaminopimelate, chloride transport, dihydrodipicolinate synthase activity, snRNA_binding Lysine_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13639.5 | zf-RING_2 | 492 | 524 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.