CFinderM001209's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     
Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
Lysine_biosynthesis0.015157154KEGG
dihydrodipicolinate synthase activity,0.018343242GO:0008840
lysine biosynthetic process via diaminopimelate,0.03848311GO:0009089

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000332G1000Eukaryotic aspartyl protease family proteinAT4G35880 (1.00E-125)
PH01000364G0200dihydrodipicolinate synthaseAT2G45440 (1.00E-135)
PH01000390G0850early-responsive to dehydration stress protein (ERD4)AT4G35870 (0.00E+00)
PH01000877G0280Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein familyAT3G44220 (5.00E-42)
PH01001573G0580-AT1G20970 (7.20E-65)
PH01002164G0040-- (-)
PH01002620G0300Ribosomal protein L20AT1G16740 (2.80E-54)
PH01003144G0060-AT3G58050 (0.00E+00)
PH01003429G0140PRA1 (Prenylated rab acceptor) family proteinAT1G55190 (1.40E-35)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000300nuclear mRNA splicing, via spliceosome,
dihydrodipicolinate synthase activity,
lysine biosynthetic process via diaminopimelate,
Lysine_biosynthesis
spliceosomal complex,
lyase activity,
snRNA_binding
rRNA binding,
metabolic process,
details
CFinderM000826dihydrodipicolinate synthase activity,
Lysine_biosynthesis
lysine biosynthetic process via diaminopimelate,
spliceosomal complex,
nuclear mRNA splicing, via spliceosome,
lyase activity,
GT48 GlycosylTransferases
C3H Transcription_Regulator(from PlantTFDB)
rRNA binding,
details
CFinderM000959RLK-Pelle_PERK-1 (from iTAK)
details
CFinderM001044details
CFinderM001134Lysine_biosynthesis
regulation of translational initiation,
eukaryotic translation initiation factor 3 complex,
spliceosomal complex,
Ribosome
details
CFinderM001428nuclear mRNA splicing, via spliceosome,
spliceosomal complex,
cell volume homeostasis,
COPII_vesicle_coating
lysine biosynthetic process via diaminopimelate,
chloride transport,
dihydrodipicolinate synthase activity,
snRNA_binding
Lysine_biosynthesis
details
CFinderM001464MYB-related Transcription_Regulator(from iTAK)
MYB_related Transcription_Regulator(from PlantTFDB)
RNA processing,
details

4.Expression profilings


Show details about module gene expression profiling