PH01003144G0060's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G58050 : 0.00E+00
Blast annotation: -
2.Location
Scaffold: PH01003144
Strand: -
| Region | Start | End |
| gene | 32086 | 39880 |
| mRNA | 32086 | 39880 |
| exon | 32086 | 34199 |
| exon | 34310 | 34438 |
| exon | 35074 | 35205 |
| exon | 35299 | 35670 |
| exon | 35909 | 36050 |
| exon | 36674 | 36933 |
| exon | 37163 | 37480 |
| exon | 39550 | 39880 |
| CDS | 32163 | 34199 |
| CDS | 34310 | 34438 |
| CDS | 35074 | 35205 |
| CDS | 35299 | 35670 |
| CDS | 35909 | 36050 |
| CDS | 36674 | 36933 |
| CDS | 37163 | 37480 |
| CDS | 39550 | 39654 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000300 | nuclear mRNA splicing, via spliceosome, dihydrodipicolinate synthase activity, lysine biosynthetic process via diaminopimelate, Lysine_biosynthesis spliceosomal complex, lyase activity, snRNA_binding rRNA binding, metabolic process, |
| coexpression network | CFinderM001134 | Lysine_biosynthesis regulation of translational initiation, eukaryotic translation initiation factor 3 complex, spliceosomal complex, Ribosome |
| coexpression network | CFinderM001209 | Lysine_biosynthesis dihydrodipicolinate synthase activity, lysine biosynthetic process via diaminopimelate, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.