Annotation of co-expression genes

PH01000364G0200's details annotation

1.Annotation

ICBR annotation: dihydrodipicolinate synthase, chloroplast precursor, putative, expressed

Blast result AT2G45440 : 1.00E-135
Blast annotation: dihydrodipicolinate synthase

2.Location

Scaffold: PH01000364
Strand: +

RegionStartEnd
gene165048170018
mRNA165048170018
exon165048166199
exon167632170018
CDS166078166199
CDS167632168559

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000300nuclear mRNA splicing, via spliceosome,
dihydrodipicolinate synthase activity,
lysine biosynthetic process via diaminopimelate,
Lysine_biosynthesis
spliceosomal complex,
lyase activity,
snRNA_binding
rRNA binding,
metabolic process,
coexpression networkCFinderM000826dihydrodipicolinate synthase activity,
Lysine_biosynthesis
lysine biosynthetic process via diaminopimelate,
spliceosomal complex,
nuclear mRNA splicing, via spliceosome,
lyase activity,
GT48 GlycosylTransferases
C3H Transcription_Regulator(from PlantTFDB)
rRNA binding,
coexpression networkCFinderM001134Lysine_biosynthesis
regulation of translational initiation,
eukaryotic translation initiation factor 3 complex,
spliceosomal complex,
Ribosome
coexpression networkCFinderM001209Lysine_biosynthesis
dihydrodipicolinate synthase activity,
lysine biosynthetic process via diaminopimelate,
coexpression networkCFinderM001428nuclear mRNA splicing, via spliceosome,
spliceosomal complex,
cell volume homeostasis,
COPII_vesicle_coating
lysine biosynthetic process via diaminopimelate,
chloride transport,
dihydrodipicolinate synthase activity,
snRNA_binding
Lysine_biosynthesis

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04889.11Cwf_Cwc_15146
PF00701.21DHDPS49323

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Lysine biosynthesis4-hydroxy-tetrahydrodipicolinate synthase [EC:4.3.3.7]ko00300K01714

10.Gene Ontology

GO AccessionGO Annotation
GO:0000398mRNA splicing, via spliceosome
GO:0003824catalytic activity
GO:0005681spliceosomal complex
GO:0008152metabolic process
GO:00088404-hydroxy-tetrahydrodipicolinate synthase
GO:0009089lysine biosynthetic process via diaminopimelate
GO:0016829lyase activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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