Gene details

Annotation of co-expression genes

PH01002620G0300's details annotation

1.Annotation

ICBR annotation: 50S ribosomal protein L20, putative, expressed

Blast result AT1G16740 : 2.80E-54
Blast annotation: Ribosomal protein L20

2.Location

Scaffold: PH01002620
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000300	nuclear mRNA splicing, via spliceosome, dihydrodipicolinate synthase activity, lysine biosynthetic process via diaminopimelate, Lysine_biosynthesis spliceosomal complex, lyase activity, snRNA_binding rRNA binding, metabolic process,
coexpression network	CFinderM000826	dihydrodipicolinate synthase activity, Lysine_biosynthesis lysine biosynthetic process via diaminopimelate, spliceosomal complex, nuclear mRNA splicing, via spliceosome, lyase activity, GT48 GlycosylTransferases C3H Transcription_Regulator(from PlantTFDB) rRNA binding,
coexpression network	CFinderM001209	Lysine_biosynthesis dihydrodipicolinate synthase activity, lysine biosynthetic process via diaminopimelate,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF00453.17	Ribosomal_L20	3	98

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Ribosome	large subunit ribosomal protein L20	ko03011	K02887

10.Gene Ontology

GO Accession	GO Annotation
GO:0003735	structural constituent of ribosome
GO:0005622	intracellular
GO:0005840	ribosome
GO:0006412	translation
GO:0019843	rRNA binding

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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