Annotation of co-expression genes

PH01002277G0200's details annotation

1.Annotation

ICBR annotation: tubulin/FtsZ domain containing protein, putative, expressed

Blast result AT5G12250 : 0
Blast annotation: beta-6 tubulin

2.Location

Scaffold: PH01002277
Strand: -

RegionStartEnd
gene147210151702
mRNA147210151702
exon147210148859
exon150573150842
exon150934151078
exon151155151702
CDS148183148859
CDS150573150842
CDS150934151078
CDS151155151355

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000050protein complex,
microtubule,
structural constituent of cytoskeleton,
microtubule-based process,
protein polymerization,
Phagosome
GTP_catabolic_process
glycine cleavage complex,
glycine decarboxylation via glycine cleavage system,
GTPase activity,
GTP binding,
glycine catabolic process,
Glyoxylate_and_dicarboxylate_metabolism
coexpression networkCFinderM000158G2-like Transcription_Regulator(from PlantTFDB)
GARP-G2-like Transcription_Regulator(from iTAK)
microtubule,
protein complex,
HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
Phagosome
protein polymerization,
microtubule-based process,
DNA binding,
structural constituent of cytoskeleton,
chromatin binding,
coexpression networkCFinderM000191TALE Transcription_Regulator(from PlantTFDB)
HB-KNOX Transcription_Regulator(from iTAK)
regulation of transcription, DNA-dependent,
HB-BELL Transcription_Regulator(from iTAK)
protein complex,
nucleus,
microtubule,
AUX/IAA Transcription_Regulator(from iTAK)
Phagosome
selenium binding,
sequence-specific DNA binding,
structural constituent of cytoskeleton,
sequence-specific DNA binding transcription factor activity,
trehalose biosynthetic process,
microtubule-based process,
protein polymerization,
coexpression networkCFinderM000609CAMTA Transcription_Regulator(from PlantTFDB)
one-carbon metabolic process,
protein polymerization,
microtubule-based process,
adenosylhomocysteinase activity,
protein binding,
Phagosome
protein complex,
microtubule,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00091.24Tubulin3195
PF03953.16Tubulin_C245365

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Phagosometubulin betako04145K07375

10.Gene Ontology

GO AccessionGO Annotation
GO:0003924GTPase activity
GO:0005200structural constituent of cytoskeleton
GO:0005525GTP binding
GO:0005874microtubule
GO:0006184GTP catabolic process
GO:0007017microtubule-based process
GO:0043234protein complex
GO:0051258protein polymerization

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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