|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | CAMTA Transcription_Regulator(from PlantTFDB) | 0.005616832 | GFam | | one-carbon metabolic process, | 0.020814785 | GO:0006730 | | protein polymerization, | 0.031099523 | GO:0051258 | | microtubule-based process, | 0.031099523 | GO:0007017 | | adenosylhomocysteinase activity, | 0.03181545 | GO:0004013 | | protein binding, | 0.032653962 | GO:0005515 | | Phagosome | 0.034764633 | KEGG | | protein complex, | 0.046649284 | GO:0043234 | | microtubule, | 0.046649284 | GO:0005874 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000162G0450 | Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | AT3G52060 (8.60E-42) | | PH01000279G0220 | S-adenosyl-L-homocysteine hydrolase | AT4G13940 (0.00E+00) | | PH01000924G0630 | hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase | AT5G48930 (3.30E-50) | | PH01001513G0250 | Tetratricopeptide repeat (TPR)-like superfamily protein | AT4G10840 (0.00E+00) | | PH01002277G0200 | beta-6 tubulin | AT5G12250 (0) | | PH01002632G0250 | Ankyrin repeat family protein | AT2G44090 (0.00E+00) | | PH01002653G0190 | Pyridoxal-5-phosphate-dependent enzyme family protein | AT3G26115 (1.90E-44) | | PH01002726G0060 | Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains | AT5G64220 (2.00E-107) | | PH01002727G0030 | - | - (-) | | PH01004323G0090 | RING/U-box superfamily protein | AT3G03550 (7.90E-56) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000050 | protein complex,
microtubule,
structural constituent of cytoskeleton,
microtubule-based process,
protein polymerization,
Phagosome
GTP_catabolic_process
glycine cleavage complex,
glycine decarboxylation via glycine cleavage system,
GTPase activity,
GTP binding,
glycine catabolic process,
Glyoxylate_and_dicarboxylate_metabolism
| details | | CFinderM000158 | G2-like Transcription_Regulator(from PlantTFDB)
GARP-G2-like Transcription_Regulator(from iTAK)
microtubule,
protein complex,
HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
Phagosome
protein polymerization,
microtubule-based process,
DNA binding,
structural constituent of cytoskeleton,
chromatin binding,
| details | | CFinderM000162 | CAMTA Transcription_Regulator(from PlantTFDB)
AUX/IAA Transcription_Regulator(from iTAK)
Dof Transcription_Regulator(from PlantTFDB)
C2C2-Dof Transcription_Regulator(from iTAK)
AGC_RSK-2 (from iTAK)
zinc_ion_transmembrane_transport
| details | | CFinderM000191 | TALE Transcription_Regulator(from PlantTFDB)
HB-KNOX Transcription_Regulator(from iTAK)
regulation of transcription, DNA-dependent,
HB-BELL Transcription_Regulator(from iTAK)
protein complex,
nucleus,
microtubule,
AUX/IAA Transcription_Regulator(from iTAK)
Phagosome
selenium binding,
sequence-specific DNA binding,
structural constituent of cytoskeleton,
sequence-specific DNA binding transcription factor activity,
trehalose biosynthetic process,
microtubule-based process,
protein polymerization,
| details | | CFinderM000678 | GT43 GlycosylTransferases
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
| details | | CFinderM001035 | GT14 GlycosylTransferases
CAMTA Transcription_Regulator(from PlantTFDB)
microtubule,
protein complex,
RNA_degradation
Phagosome
| details | | CFinderM001381 | CAMTA Transcription_Regulator(from PlantTFDB)
| details |
4.Expression profilings |
