CFinderM000609's details annotation
1.Tissue preferential analysis
root  culm  leaf  shoot  sheath  rhizome  bud  panicle  
     
2.Stress differential analysis
     
     

Protein:Yellow color--query protein     Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein     Blue--proteins own interaction and negative co-expression relationship with target protein     Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

1.Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
CAMTA Transcription_Regulator(from PlantTFDB)0.005616832GFam
one-carbon metabolic process,0.020814785GO:0006730
protein polymerization,0.031099523GO:0051258
microtubule-based process,0.031099523GO:0007017
adenosylhomocysteinase activity,0.03181545GO:0004013
protein binding,0.032653962GO:0005515
Phagosome0.034764633KEGG
protein complex,0.046649284GO:0043234
microtubule,0.046649284GO:0005874

2.Module member annotation

Gene IDAnnotationArabidopsis ortholog (Blast e-value)
PH01000162G0450Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family proteinAT3G52060 (8.60E-42)
PH01000279G0220S-adenosyl-L-homocysteine hydrolaseAT4G13940 (0.00E+00)
PH01000924G0630hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferaseAT5G48930 (3.30E-50)
PH01001513G0250Tetratricopeptide repeat (TPR)-like superfamily proteinAT4G10840 (0.00E+00)
PH01002277G0200beta-6 tubulinAT5G12250 (0)
PH01002632G0250Ankyrin repeat family proteinAT2G44090 (0.00E+00)
PH01002653G0190Pyridoxal-5-phosphate-dependent enzyme family proteinAT3G26115 (1.90E-44)
PH01002726G0060Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domainsAT5G64220 (2.00E-107)
PH01002727G0030-- (-)
PH01004323G0090RING/U-box superfamily proteinAT3G03550 (7.90E-56)

3.Direct connection functional modules

Module IDFunction AnnotationOverlap condition
CFinderM000050protein complex,
microtubule,
structural constituent of cytoskeleton,
microtubule-based process,
protein polymerization,
Phagosome
GTP_catabolic_process
glycine cleavage complex,
glycine decarboxylation via glycine cleavage system,
GTPase activity,
GTP binding,
glycine catabolic process,
Glyoxylate_and_dicarboxylate_metabolism
details
CFinderM000158G2-like Transcription_Regulator(from PlantTFDB)
GARP-G2-like Transcription_Regulator(from iTAK)
microtubule,
protein complex,
HB-BELL Transcription_Regulator(from iTAK)
TALE Transcription_Regulator(from PlantTFDB)
Phagosome
protein polymerization,
microtubule-based process,
DNA binding,
structural constituent of cytoskeleton,
chromatin binding,
details
CFinderM000162CAMTA Transcription_Regulator(from PlantTFDB)
AUX/IAA Transcription_Regulator(from iTAK)
Dof Transcription_Regulator(from PlantTFDB)
C2C2-Dof Transcription_Regulator(from iTAK)
AGC_RSK-2 (from iTAK)
zinc_ion_transmembrane_transport
details
CFinderM000191TALE Transcription_Regulator(from PlantTFDB)
HB-KNOX Transcription_Regulator(from iTAK)
regulation of transcription, DNA-dependent,
HB-BELL Transcription_Regulator(from iTAK)
protein complex,
nucleus,
microtubule,
AUX/IAA Transcription_Regulator(from iTAK)
Phagosome
selenium binding,
sequence-specific DNA binding,
structural constituent of cytoskeleton,
sequence-specific DNA binding transcription factor activity,
trehalose biosynthetic process,
microtubule-based process,
protein polymerization,
details
CFinderM000678GT43 GlycosylTransferases
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
details
CFinderM001035GT14 GlycosylTransferases
CAMTA Transcription_Regulator(from PlantTFDB)
microtubule,
protein complex,
RNA_degradation
Phagosome
details
CFinderM001381CAMTA Transcription_Regulator(from PlantTFDB)
details

4.Expression profilings


Show details about module gene expression profiling