PH01002777G0070's details annotation
1.Annotation
ICBR annotation: DUF584 domain containing protein, putative, expressed
Blast result AT3G15040 : 2.30E-14
Blast annotation: Protein of unknown function, DUF584
2.Location
Scaffold: PH01002777
Strand: +
| Region | Start | End |
| gene | 29979 | 30930 |
| mRNA | 29979 | 30930 |
| exon | 29979 | 30930 |
| CDS | 30182 | 30649 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000617 | SNF2 Transcription_Regulator(from iTAK) helicase activity, DNA binding, hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, |
| coexpression network | CFinderM001140 | RB Transcription_Regulator(from iTAK) nucleus, regulation_of_cell_cycle SNF2 Transcription_Regulator(from iTAK) Drug_metabolism_-_cytochrome_P450 Metabolism_of_xenobiotics_by_cytochrome_P450 Glutathione_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04520.12 | Senescence_reg | 28 | 155 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.