PH01002806G0200's details annotation
1.Annotation
ICBR annotation: auxin response factor, putative, expressed
Blast result AT5G62000 : 0.00E+00
Blast annotation: auxin response factor 2
2.Location
Scaffold: PH01002806
Strand: +
| Region | Start | End |
| gene | 125440 | 132986 |
| mRNA | 125440 | 132986 |
| exon | 125440 | 125656 |
| exon | 125754 | 125875 |
| exon | 126779 | 126877 |
| exon | 126965 | 127018 |
| exon | 127102 | 127275 |
| exon | 127394 | 127478 |
| exon | 127929 | 128019 |
| exon | 128121 | 128285 |
| exon | 128510 | 128629 |
| exon | 128737 | 128812 |
| exon | 128884 | 129055 |
| exon | 129142 | 130097 |
| exon | 131244 | 131434 |
| exon | 131540 | 132986 |
| CDS | 125617 | 125656 |
| CDS | 125754 | 125875 |
| CDS | 126779 | 126877 |
| CDS | 126965 | 127018 |
| CDS | 127102 | 127275 |
| CDS | 127394 | 127478 |
| CDS | 127929 | 128019 |
| CDS | 128121 | 128285 |
| CDS | 128510 | 128629 |
| CDS | 128737 | 128812 |
| CDS | 128884 | 129055 |
| CDS | 129142 | 130097 |
| CDS | 131244 | 131434 |
| CDS | 131540 | 131717 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001195 | nucleic acid binding, ARF Transcription_Regulator(from PlantTFDB) B3-ARF Transcription_Regulator(from iTAK) C3H Transcription_Regulator(from PlantTFDB) endoplasmic reticulum, response to hormone stimulus, glycerol ether metabolic process, Protein_processing_in_endoplasmic_reticulum |
| coexpression network | CFinderM001739 | mannose biosynthetic process, phosphomannomutase activity, ARF Transcription_Regulator(from PlantTFDB) SNF2 Transcription_Regulator(from iTAK) B3-ARF Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | B3-ARF |
| Transcription_Regulator(from PlantTFDB) | ARF |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02362.20 | B3 | 134 | 235 |
| PF06507.12 | Auxin_resp | 260 | 342 |
| PF02309.15 | AUX_IAA | 686 | 793 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0009725 | response to hormone stimulus |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.