Annotation of co-expression genes

PH01002867G0190's details annotation

1.Annotation

ICBR annotation: Phosphatidylinositol kinase and FAT containing domain protein, putative, expressed

Blast result AT1G50030 : 0.00E+00
Blast annotation: target of rapamycin

2.Location

Scaffold: PH01002867
Strand: -

RegionStartEnd
gene109791116305
mRNA109791116305
exon109791110447
exon110534110707
exon111600111734
exon111931112003
exon112172112182
exon112241112324
exon112446112574
exon112670112843
exon113424113618
exon114472114546
exon114627114707
exon114954115145
exon115221115334
exon116237116305
CDS110118110447
CDS110534110707
CDS111600111734
CDS111931112003
CDS112172112182
CDS112241112324
CDS112446112574
CDS112670112843
CDS113424113618
CDS114472114546
CDS114627114707
CDS114954115145
CDS115221115334
CDS116237116245

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000256signal recognition particle,
proton-transporting two-sector ATPase complex, proton-transporting domain,
coexpression networkCFinderM000860protein targeting,
drug_binding
P-P-bond-hydrolysis-driven protein transmembrane transporter activity,
coexpression networkCFinderM001581WASH_complex
DNA_ligation_involved_in_DNA_repair
drug_binding
DNA_ligase_activity
DNA ligase (ATP) activity,
DNA recombination,
DNA repair,
coexpression networkCFinderM001830WASH_complex
drug_binding
oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor,
Butanoate_metabolism
Pyruvate_metabolism
Citrate_cycle_(TCA_cycle)
Glycolysis_/_Gluconeogenesis

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08771.10FRB_dom48146
PF00454.26PI3_PI4_kinase204352
PF00454.26PI3_PI4_kinase353435
PF02260.19FATC546572

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding
GO:0008144drug binding
GO:0016772transferase activity, transferring phosphorus-containing groups
GO:0016773phosphotransferase activity, alcohol group as acceptor

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.