Gene details

Annotation of co-expression genes

PH01002923G0150's details annotation

1.Annotation

ICBR annotation: MSH-like DNA mismatch repair protein, putative, expressed

Blast result AT3G18524 : 0.00E+00
Blast annotation: MUTS homolog 2

2.Location

Scaffold: PH01002923
Strand: -

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	details
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000567	C2H2 Transcription_Regulator(from PlantTFDB) Peroxisome Mismatch_repair
coexpression network	CFinderM000568	nuclear chromosome, Mismatch_repair Mismatch_repair mRNA_surveillance_pathway
coexpression network	CFinderM001440	Mismatch_repair nucleotide-excision repair, Mismatch_repair nuclear pore, nucleobase-containing compound metabolic process,
coexpression network	CFinderM001465	cellular_homeostasis mitochondrial outer membrane, Peroxisome RNA methylation, Mismatch_repair Mismatch_repair C2H2 Transcription_Regulator(from PlantTFDB) RNA_degradation mismatched DNA binding, O-methyltransferase activity, hydrolase_activity,_acting_on_acid_anhydrides RNA methyltransferase activity,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Mismatch repair	DNA mismatch repair protein MSH2	ko03430	K08735

10.Gene Ontology

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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