PH01002983G0240's details annotation
1.Annotation
ICBR annotation: splicing factor-related, putative, expressed
Blast result AT4G01000 : 3.90E-22
Blast annotation: Ubiquitin-like superfamily protein
2.Location
Scaffold: PH01002983
Strand: +
| Region | Start | End |
| gene | 127188 | 130613 |
| mRNA | 127188 | 130613 |
| exon | 127188 | 129528 |
| exon | 129847 | 129863 |
| exon | 130008 | 130613 |
| CDS | 129043 | 129528 |
| CDS | 129847 | 129863 |
| CDS | 130008 | 130548 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001290 | Protein_processing_in_endoplasmic_reticulum AGC_NDR (from iTAK) |
| coexpression network | CFinderM001311 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis serine-type peptidase activity, CAMK_CDPK (from iTAK) histone modification, phospholipid biosynthetic process, aromatic amino acid family biosynthetic process, phosphatidylserine decarboxylase activity, 3-deoxy-7-phosphoheptulonate synthase activity, |
| coexpression network | CFinderM001775 | myosin complex, TBP-class_protein_binding Fructose_and_mannose_metabolism Basal_transcription_factors Amino_sugar_and_nucleotide_sugar_metabolism motor activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13019.5 | Telomere_Sde2 | 7 | 155 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.