Gene details

Annotation of co-expression genes

PH01003025G0200's details annotation

1.Annotation

ICBR annotation: ubiquitin-protein ligase 1, putative, expressed

Blast result AT1G55860 : 0.00E+00
Blast annotation: ubiquitin-protein ligase 1

2.Location

Scaffold: PH01003025
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	details
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000068	cellular protein modification process, ubiquitin-protein ligase activity, Ubiquitin_mediated_proteolysis binding, intracellular, protein binding, CE8 Carbohydrate_Esterases GH28 Glycoside_Hydrolases Alfin-like Transcription_Regulator(from iTAK) SWI/SNF-SWI3 Transcription_Regulator(from iTAK) TORC1_complex
coexpression network	CFinderM000545	binding, SNF2 Transcription_Regulator(from iTAK) helicase activity, ubiquitin-protein ligase activity, cellular protein modification process, TOR_signaling nucleic acid binding, TORC1_complex DNA binding, hydrolase_activity,_acting_on_acid_anhydrides RNA metabolic process, RNA_transport nuclear-transcribed mRNA catabolic process, nonsense-mediated decay, Ubiquitin_mediated_proteolysis nucleotide binding, RNA binding, ATP binding, protein binding,
coexpression network	CFinderM000769	cellular protein modification process, Ubiquitin_mediated_proteolysis ubiquitin-protein ligase activity, intracellular, binding, carbon-sulfur lyase activity,
coexpression network	CFinderM000891	cellular protein modification process, Ubiquitin_mediated_proteolysis binding, ubiquitin-protein ligase activity, SNF2 Transcription_Regulator(from iTAK) RNA metabolic process, intracellular,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Ubiquitin mediated proteolysis	E3 ubiquitin-protein ligase HUWE1 [EC:6.3.2.19]	ko04120	K10592

10.Gene Ontology

GO Accession	GO Annotation
GO:0004842	ubiquitin-protein ligase activity
GO:0005488	binding
GO:0005515	protein binding
GO:0005622	intracellular
GO:0006464	cellular protein modification process

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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