PH01003232G0190's details annotation
1.Annotation
ICBR annotation: transcriptional repressor, putative, expressed
Blast result AT1G24190 : 0.00E+00
Blast annotation: SIN3-like 3
2.Location
Scaffold: PH01003232
Strand: +
| Region | Start | End |
| gene | 125054 | 137811 |
| mRNA | 125054 | 137811 |
| exon | 125054 | 127229 |
| exon | 127355 | 127526 |
| exon | 127607 | 127705 |
| exon | 127785 | 127952 |
| exon | 128354 | 128648 |
| exon | 128869 | 129002 |
| exon | 129136 | 129211 |
| exon | 129286 | 129333 |
| exon | 129419 | 129681 |
| exon | 129752 | 129906 |
| exon | 130422 | 130549 |
| exon | 130686 | 130940 |
| exon | 131125 | 131796 |
| exon | 131913 | 131998 |
| exon | 132274 | 132915 |
| exon | 132999 | 133099 |
| exon | 133174 | 133300 |
| exon | 133388 | 133540 |
| exon | 133847 | 133999 |
| exon | 134150 | 134313 |
| exon | 134390 | 134501 |
| exon | 135064 | 135168 |
| exon | 135351 | 137811 |
| CDS | 127030 | 127229 |
| CDS | 127355 | 127526 |
| CDS | 127607 | 127705 |
| CDS | 127785 | 127952 |
| CDS | 128354 | 128648 |
| CDS | 128869 | 129002 |
| CDS | 129136 | 129211 |
| CDS | 129286 | 129333 |
| CDS | 129419 | 129681 |
| CDS | 129752 | 129906 |
| CDS | 130422 | 130549 |
| CDS | 130686 | 130940 |
| CDS | 131125 | 131796 |
| CDS | 131913 | 131998 |
| CDS | 132274 | 132915 |
| CDS | 132999 | 133099 |
| CDS | 133174 | 133300 |
| CDS | 133388 | 133540 |
| CDS | 133847 | 133999 |
| CDS | 134150 | 134313 |
| CDS | 134390 | 134501 |
| CDS | 135064 | 135168 |
| CDS | 135351 | 135491 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001374 | Others Transcription_Regulator(from iTAK) |
| coexpression network | CFinderM001375 | nucleus, Others Transcription_Regulator(from iTAK) transcription cofactor activity, histone acetyltransferase activity, ubiquitin-dependent protein catabolic process, regulation of transcription, DNA-dependent, ubiquitin thiolesterase activity, |
| coexpression network | CFinderM001490 | protein phosphatase type 2A complex, Others Transcription_Regulator(from iTAK) protein phosphatase type 2A regulator activity, translational initiation, RNA_transport mRNA_surveillance_pathway |
| coexpression network | CFinderM001571 | protein phosphatase type 2A complex, Others Transcription_Regulator(from iTAK) mRNA_surveillance_pathway protein phosphatase type 2A regulator activity, RNA methyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | Others |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02671.20 | PAH | 51 | 95 |
| PF02671.20 | PAH | 132 | 176 |
| PF02671.20 | PAH | 331 | 375 |
| PF08295.11 | Sin3_corepress | 473 | 565 |
| PF16879.4 | Sin3a_C | 1117 | 1257 |
| PF16879.4 | Sin3a_C | 1258 | 1447 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.