Annotation of co-expression genes

PH01004090G0100's details annotation

1.Annotation

ICBR annotation: OsSigP6 - Putative Type I Signal Peptidase homologue

Blast result AT3G24590 : 4.60E-37
Blast annotation: plastidic type i signal peptidase 1

2.Location

Scaffold: PH01004090
Strand: +

RegionStartEnd
gene4912552358
mRNA4912552358
exon4912550473
exon5083150899
exon5099651064
exon5156251662
exon5203352358
CDS5019550473
CDS5083150899
CDS5099651064
CDS5156251662
CDS5203352102

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000597GH100 Glycoside_Hydrolases
RLK-Pelle_SD-2b (from iTAK)
coexpression networkCFinderM000916bZIP Transcription_Regulator(from PlantTFDB)
Protein_export
MYB_related Transcription_Regulator(from PlantTFDB)
MYB-related Transcription_Regulator(from iTAK)
coexpression networkCFinderM000924Ribosome_biogenesis_in_eukaryotes
Protein_export
omega_peptidase_activity
ribosome biogenesis,
coexpression networkCFinderM001200GH100 Glycoside_Hydrolases
Lipoic_acid_metabolism
octanoyltransferase activity,
glycopeptide_alpha-N-acetylgalactosaminidase_activity
lipoate biosynthetic process,
Protein_export
cellular protein modification process,
serine-type peptidase activity,
coexpression networkCFinderM001311Phenylalanine,_tyrosine_and_tryptophan_biosynthesis
serine-type peptidase activity,
CAMK_CDPK (from iTAK)
histone modification,
phospholipid biosynthetic process,
aromatic amino acid family biosynthetic process,
phosphatidylserine decarboxylase activity,
3-deoxy-7-phosphoheptulonate synthase activity,
coexpression networkCFinderM001351GH100 Glycoside_Hydrolases
Protein_export
glycopeptide_alpha-N-acetylgalactosaminidase_activity
serine-type peptidase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF10502.8Peptidase_S26101204

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Protein exportsignal peptidase I [EC:3.4.21.89]ko03060K03100

10.Gene Ontology

GO AccessionGO Annotation
GO:0006508proteolysis
GO:0008236serine-type peptidase activity
GO:0016020membrane
GO:0016021integral to membrane

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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