PH01004294G0040's details annotation
1.Annotation
ICBR annotation: ZOS8-11 - C2H2 zinc finger protein, expressed
Blast result AT2G27100 : 1.00E-171
Blast annotation: C2H2 zinc-finger protein SERRATE (SE)
2.Location
Scaffold: PH01004294
Strand: -
| Region | Start | End |
| gene | 28879 | 32328 |
| mRNA | 28879 | 32328 |
| exon | 28879 | 29000 |
| exon | 29733 | 29939 |
| exon | 30016 | 30233 |
| exon | 30323 | 30371 |
| exon | 30460 | 31251 |
| exon | 31345 | 31413 |
| exon | 31523 | 31570 |
| exon | 31835 | 31909 |
| exon | 32086 | 32328 |
| CDS | 28940 | 29000 |
| CDS | 29733 | 29939 |
| CDS | 30016 | 30233 |
| CDS | 30323 | 30371 |
| CDS | 30460 | 31251 |
| CDS | 31345 | 31413 |
| CDS | 31523 | 31570 |
| CDS | 31835 | 31909 |
| CDS | 32086 | 32150 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000201 | RLK-Pelle_CrRLK1L-1 (from iTAK) 5'-3' exoribonuclease activity, nucleobase-containing compound metabolic process, Ribosome_biogenesis_in_eukaryotes RNA_degradation |
| coexpression network | CFinderM000733 | TBP-class_protein_binding positive_regulation_of_transcription,_DNA-templated WASH_complex outer membrane, transcription initiation, DNA-dependent, zinc ion binding, |
| coexpression network | CFinderM001679 | PHD Transcription_Regulator(from iTAK) oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, Butanoate_metabolism nucleotidyltransferase activity, serine-type carboxypeptidase activity, Pyruvate_metabolism Citrate_cycle_(TCA_cycle) Glycolysis_/_Gluconeogenesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12066.7 | DUF3546 | 4 | 85 |
| PF04959.12 | ARS2 | 247 | 414 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.