PH01004567G0060's details annotation
1.Annotation
ICBR annotation: VHS and GAT domain containing protein, expressed
Blast result AT2G38410 : 1.90E-27
Blast annotation: ENTH/VHS/GAT family protein
2.Location
Scaffold: PH01004567
Strand: +
| Region | Start | End |
| gene | 33295 | 41489 |
| mRNA | 33295 | 41489 |
| exon | 33295 | 33826 |
| exon | 34744 | 34825 |
| exon | 35088 | 35173 |
| exon | 39652 | 39897 |
| exon | 39991 | 41489 |
| CDS | 33687 | 33826 |
| CDS | 34744 | 34825 |
| CDS | 35088 | 35173 |
| CDS | 39652 | 39897 |
| CDS | 39991 | 40783 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000016 | protein phosphorylation, protein kinase activity, transferase activity, transferring phosphorus-containing groups, protein serine/threonine kinase activity, ATP binding, RLK-Pelle_LRR-XII-1 (from iTAK) RLK-Pelle_DLSV (from iTAK) RLK-Pelle_WAK (from iTAK) ADP_binding polysaccharide_binding transmembrane_transporter_activity WRKY Transcription_Regulator(from PlantTFDB) recognition of pollen, transmembrane transport, defense response, RLK-Pelle_L-LEC (from iTAK) membrane, integral to membrane, RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK_LRK10L-1 (from iTAK) ATPase activity, substrate-specific transmembrane transporter activity, RLK-Pelle_LRR-XI-1 (from iTAK) 6-phosphofructokinase complex, |
| coexpression network | CFinderM000392 | malate_transport Peroxisome Glyoxylate_and_dicarboxylate_metabolism glycopeptide_alpha-N-acetylgalactosaminidase_activity serine-type carboxypeptidase activity, FMN binding, |
| coexpression network | CFinderM000829 | RLK-Pelle_LRR-Xa (from iTAK) alternative_oxidase_activity isopentenyl-diphosphate delta-isomerase activity, Terpenoid_backbone_biosynthesis CAMK_CAMKL-CHK1 (from iTAK) |
| coexpression network | CFinderM000981 | alternative_oxidase_activity Arachidonic_acid_metabolism Metabolism_of_xenobiotics_by_cytochrome_P450 chloroplast, structural molecule activity, |
| coexpression network | CFinderM001423 | Glycine,_serine_and_threonine_metabolism intracellular, Arachidonic_acid_metabolism glutathione peroxidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03127.13 | GAT | 57 | 130 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005622 | intracellular |
| GO:0006886 | intracellular protein transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.