PH01004612G0030's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G39785 : 1.10E-88
Blast annotation: Protein of unknown function (DUF1666)
2.Location
Scaffold: PH01004612
Strand: -
| Region | Start | End |
| gene | 4044 | 13445 |
| mRNA | 4044 | 13445 |
| exon | 4044 | 4883 |
| exon | 5070 | 5203 |
| exon | 6742 | 6942 |
| exon | 7035 | 7264 |
| exon | 7362 | 7772 |
| exon | 10692 | 13024 |
| exon | 13140 | 13445 |
| CDS | 4595 | 4883 |
| CDS | 5070 | 5203 |
| CDS | 6742 | 6942 |
| CDS | 7035 | 7264 |
| CDS | 7362 | 7772 |
| CDS | 10692 | 13024 |
| CDS | 13140 | 13315 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000475 | TKL-Pl-6 (from iTAK) carbohydrate phosphorylation, RLK-Pelle_RLCK-VIIa-2 (from iTAK) galactokinase activity, diphosphate-fructose-6-phosphate 1-phosphotransferase activity, fructose_6-phosphate_metabolic_process galactose metabolic process, Fructose_and_mannose_metabolism Galactose_metabolism ATP binding, 6-phosphofructokinase activity, kinase activity, |
| coexpression network | CFinderM001197 | Ribosome translation, G2-like Transcription_Regulator(from PlantTFDB) GARP-G2-like Transcription_Regulator(from iTAK) L-ascorbic acid binding, structural constituent of ribosome, Arginine_and_proline_metabolism |
| coexpression network | CFinderM001692 | TKL-Pl-4 (from iTAK) carbohydrate phosphorylation, Ribosome translation, galactose metabolic process, intracellular, galactokinase activity, Galactose_metabolism Amino_sugar_and_nucleotide_sugar_metabolism structural constituent of ribosome, kinase activity, |
| coexpression network | CFinderM001693 | translation, Ribosome structural constituent of ribosome, intracellular, |
| coexpression network | CFinderM001735 | TALE Transcription_Regulator(from PlantTFDB) HB-BELL Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07891.11 | DUF1666 | 888 | 1119 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.