PH01004624G0020's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G65770 : 1.00E-164
Blast annotation: little nuclei4
2.Location
Scaffold: PH01004624
Strand: -
| Region | Start | End |
| gene | 5210 | 13643 |
| mRNA | 5210 | 13643 |
| exon | 5210 | 6209 |
| exon | 6472 | 6691 |
| exon | 6783 | 8485 |
| exon | 8566 | 8649 |
| exon | 8737 | 9007 |
| exon | 9200 | 9453 |
| exon | 10075 | 10284 |
| exon | 12169 | 13643 |
| CDS | 6078 | 6209 |
| CDS | 6472 | 6691 |
| CDS | 6783 | 8485 |
| CDS | 8566 | 8649 |
| CDS | 8737 | 9007 |
| CDS | 9200 | 9453 |
| CDS | 10075 | 10284 |
| CDS | 12169 | 12324 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000038 | bHLH Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000431 | Porphyrin_and_chlorophyll_metabolism C2C2-Dof Transcription_Regulator(from iTAK) HB-BELL Transcription_Regulator(from iTAK) TRAF Transcription_Regulator(from iTAK) Dof Transcription_Regulator(from PlantTFDB) TALE Transcription_Regulator(from PlantTFDB) oxygen-dependent protoporphyrinogen oxidase activity, |
| coexpression network | CFinderM000767 | transport, transporter activity, membrane, acid phosphatase activity, cysteine-type endopeptidase activity, |
| coexpression network | CFinderM001381 | CAMTA Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.