PH01004633G0020's details annotation
1.Annotation
ICBR annotation: EDR2, putative, expressed
Blast result AT5G10750 : 1.60E-89
Blast annotation: Protein of unknown function (DUF1336)
2.Location
Scaffold: PH01004633
Strand: +
| Region | Start | End |
| gene | 13308 | 14676 |
| mRNA | 13308 | 14676 |
| exon | 13308 | 13875 |
| exon | 13971 | 14676 |
| CDS | 13486 | 13875 |
| CDS | 13971 | 14501 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001694 | TKL_CTR1-DRK-2 (from iTAK) mitochondrial respiratory chain complex IV, mitochondrial inner membrane, Steroid_hormone_biosynthesis Fatty_acid_elongation Biosynthesis_of_unsaturated_fatty_acids cytochrome-c oxidase activity, histone acetyltransferase activity, transcription cofactor activity, |
| coexpression network | CFinderM001796 | HB-other Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001797 | proton-transporting two-sector ATPase complex, proton-transporting domain, proton-transporting V-type ATPase, V0 domain, mediator complex, regulation of transcription from RNA polymerase II promoter, ATP hydrolysis coupled proton transport, MYB-related Transcription_Regulator(from iTAK) RNA_polymerase_II_transcription_cofactor_activity hydrogen ion transmembrane transporter activity, Phagosome Oxidative_phosphorylation |
| coexpression network | CFinderM001798 | proton-transporting V-type ATPase, V0 domain, proton-transporting two-sector ATPase complex, proton-transporting domain, ATP hydrolysis coupled proton transport, Phagosome Oxidative_phosphorylation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07059.11 | DUF1336 | 44 | 266 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.