PH01004872G0080's details annotation
1.Annotation
ICBR annotation: pre-mRNA-splicing factor SLU7, putative, expressed
Blast result AT1G65660 : 0.00E+00
Blast annotation: Pre-mRNA splicing Prp18-interacting factor
2.Location
Scaffold: PH01004872
Strand: +
| Region | Start | End |
| gene | 43673 | 50204 |
| mRNA | 43673 | 50204 |
| exon | 43673 | 45025 |
| exon | 45302 | 45465 |
| exon | 45591 | 45688 |
| exon | 46081 | 46226 |
| exon | 46263 | 46491 |
| exon | 46607 | 46742 |
| exon | 46945 | 47157 |
| exon | 47744 | 47957 |
| exon | 48394 | 48515 |
| exon | 48602 | 48744 |
| exon | 49211 | 50204 |
| CDS | 45010 | 45025 |
| CDS | 45302 | 45465 |
| CDS | 45591 | 45688 |
| CDS | 46081 | 46226 |
| CDS | 46263 | 46491 |
| CDS | 46607 | 46742 |
| CDS | 46945 | 47157 |
| CDS | 47744 | 47957 |
| CDS | 48394 | 48515 |
| CDS | 48602 | 48744 |
| CDS | 49211 | 49853 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001570 | cis-Golgi network, transcription factor TFIID complex, Basal_transcription_factors |
| coexpression network | CFinderM001635 | Ribosome translation, Ribosome intracellular, C3H Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM001866 | sterol metabolic process, Steroid_biosynthesis cholestenol delta-isomerase activity, protein catabolic process, MYB_related Transcription_Regulator(from PlantTFDB) C3H Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF11708.7 | Slu7 | 131 | 260 |
| PF11708.7 | Slu7 | 264 | 358 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Spliceosome | pre-mRNA-processing factor SLU7 | ko03041 | K12819 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.